PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29647.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 308aa    MW: 33963.3 Da    PI: 8.3293
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29647.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19162195134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  KZV29647.1 162 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 195
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.941156192IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-20156208IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13158195No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15160195IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.08E-12161189No hitNo description
PfamPF003206.2E-17162195IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNLNIAPSPF TVEQQIDGDF DQNPFSCQFL YDAIQNHTAG YCDHQLYQLQ HHQQEDSFGC  60
DGGSSSYDNK NKDEPGIKLT LWNEEDHHVP DKSHAIMEAN CNPVKWVPSE ISCLMQKKTT  120
DSNPNSVNFK INTSVENMIQ ASHSWETDSN SSISYSNPVR VCSDCNTTKT PLWRSGPKGP  180
KSLCNACGIR QRKARRAAMA AASAAANGMA VVLADNKPPP SLKTIKLKNK EKIIRNKGNA  240
PNFKKHRKMA ATGAGAPSSN GDITKKLDLE DFLINLSKNL AFRFRVFPQD EKDAAILLMA  300
LSSGLVHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.21e-66LOW QUALITY PROTEIN: putative GATA transcription factor 22
STRINGMigut.J00606.1.p6e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-20cytokinin-responsive gata factor 1