PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV29158.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 557aa    MW: 62688.8 Da    PI: 9.3335
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV29158.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-1658104148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd+ l++av+ + g++Wk+Ia+ ++ +R++ qc +rwqk+l
       KZV29158.1  58 KGGWTREEDDTLKRAVTAFRGKSWKKIAEFFP-NRSEVQCLHRWQKVL 104
                      688*****************************.************986 PP
2Myb_DNA-binding60.43.8e-19110156148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
       KZV29158.1 110 KGPWTQEEDEKITELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 156
                      79******************************.*************97 PP
3Myb_DNA-binding51.52.2e-16162205146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE++ l++a++ +G++ W+  a+ ++ gRt++ +k++w++
       KZV29158.1 162 KEAWTLEEELSLLNAHRIHGNK-WAELAKLLP-GRTDNAIKNHWNS 205
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.97153104IPR017930Myb domain
SuperFamilySSF466893.3E-1455111IPR009057Homeodomain-like
SMARTSM007177.5E-1457106IPR001005SANT/Myb domain
PfamPF002492.7E-1458104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-1860109IPR009057Homeodomain-like
CDDcd001672.04E-1161104No hitNo description
PROSITE profilePS5129430.69105160IPR017930Myb domain
SuperFamilySSF466891.91E-30107203IPR009057Homeodomain-like
SMARTSM007175.1E-18109158IPR001005SANT/Myb domain
PfamPF002494.4E-18110156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-27110159IPR009057Homeodomain-like
CDDcd001673.68E-15112156No hitNo description
Gene3DG3DSA:1.10.10.608.7E-22160211IPR009057Homeodomain-like
PROSITE profilePS5129420.678161211IPR017930Myb domain
SMARTSM007177.2E-15161209IPR001005SANT/Myb domain
PfamPF002491.6E-14162205IPR001005SANT/Myb domain
CDDcd001675.80E-11164207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MAEQADEFTL ENKKSTVASG SSVSENSSNT AVKSPSVRSP SSISSAHRRT TGPIRRAKGG  60
WTREEDDTLK RAVTAFRGKS WKKIAEFFPN RSEVQCLHRW QKVLNPELIK GPWTQEEDEK  120
ITELVARYGP TKWSVIAKSL PGRIGKQCRE RWHNHLNPRI KKEAWTLEEE LSLLNAHRIH  180
GNKWAELAKL LPGRTDNAIK NHWNSSLKKK LDFYLATGNL PPVAKHVTQN GVREINRTAL  240
VGEVHFGSTK GFEMTAFTSP EPTDIDKIEY GRYDPGNTQE NPGITASHVR QDGLKIMEKN  300
PDASTVKLLS KLTTSELSKS AFPSEADTIQ SNVESEIERH GTYDEVDRCQ TLGEPSPNDC  360
QIQGTLYYSA PNLEKYLQQD SALQKNSLML FDSDISLDVP PNIFLTPPSV KGGSSFLQTP  420
ESVLKFAAKS FPNTPSILRK RKSETRHREA ILPHSDNNHM DIFPKVGLQN STLCLDSICD  480
DDAGSSSIKL FDASPPYRLS FRRNYVLKSV GKQLNFANNM KQGYCANDTK LENSMVKLIP  540
PFTKFYTRQK RDKECCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-70572115159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-70572115159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV29158.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.10.0transcription factor MYB3R-3-like isoform X2
TrEMBLA0A2Z7B5D50.0A0A2Z7B5D5_9LAMI; Uncharacterized protein
STRINGMigut.L01945.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-121myb domain protein 3r-5