PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV28807.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 690aa MW: 78152 Da PI: 6.2231

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV28807.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365	1e-111	316	685	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + lL++cA+av+s d + + lL r+++++sp gd +Rla+yf+ AL+ar+a++++e y+a+++++ s + l+a+k+f ++P+ k+s+l aN+ KZV28807.1 316 RGLLIQCAQAVASFDIRTFNDLLIRIRQHSSPLGDGSERLAHYFADALEARVAGTGTERYAAISSRRIS---AAMILKAYKTFITACPYRKISNLFANK 411 679********************************************************99999998...999******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I + + +++r+HiiDf+i +G+QWp+L+q+L++R+egpp+lRiTg++ p++g +e+++ tg+rLa+++e+++vpfef++ +a+++e+++le+Lr++ KZV28807.1 412 TIKKLATKATRIHIIDFGILYGFQWPCLIQSLSERTEGPPNLRITGIDFPQTGfrPAERVKDTGHRLAEYCERFNVPFEFTA-IAQKWETITLEDLRID 509 ************************************************9*************************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E l+Vn+ ++l++++de+v ++s+rd vL+l+++++P+++++ + n++ F +rf e+l ++s++fd++ea++++e+ er E++++g+ei+n KZV28807.1 510 KNELLVVNSLYRLQNVPDETVIVNSPRDVVLDLIRKINPDLFIHGIINGTFNTPFFITRFRETLFHFSSMFDMFEATIAQEDPERLLFEEHIFGKEIMN 608 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vaceg+er+er et+++W++r +aG++++pl+ +++k +k +++ + + ++v+e+ +++++gWk+r + +S W KZV28807.1 609 IVACEGSERVERPETYKQWQARNVRAGLRQLPLDPEIVKHVKNKVKREYHKDFSVDEDGKWMLQGWKGRVIHGLSYW 685 *******************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.256	289	666	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-109	316	685	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MNTIVHQYPV AVEEFQFSHH AIPNFLEENF NNNFDGFPVS TKGSPSPPAD ESSSEGESST 60 EIDHSDAMLR FINHMLMEEV DLENKPCMLL DSLALQATEK SLYDVLNYDV GENPGSQSEN 120 FTKSTSNCVS ARSSDATSFI ESNWNKLDSQ SFFGSSKRII SHGVFTMDGP LLNQYSVSNS 180 SSGNSDRKLI GDDFVSHSSE TKDDCTEIVG RDELDISPNS SKEKKNRGRG DGDCLEEHRS 240 RKQVADDLGE VEPLEIYDNV LLCSNTDNPL MPSHDEVKKS ESTKKSRKKD KSKESNKGNP 300 KGGRKRGGAK EVVDLRGLLI QCAQAVASFD IRTFNDLLIR IRQHSSPLGD GSERLAHYFA 360 DALEARVAGT GTERYAAISS RRISAAMILK AYKTFITACP YRKISNLFAN KTIKKLATKA 420 TRIHIIDFGI LYGFQWPCLI QSLSERTEGP PNLRITGIDF PQTGFRPAER VKDTGHRLAE 480 YCERFNVPFE FTAIAQKWET ITLEDLRIDK NELLVVNSLY RLQNVPDETV IVNSPRDVVL 540 DLIRKINPDL FIHGIINGTF NTPFFITRFR ETLFHFSSMF DMFEATIAQE DPERLLFEEH 600 IFGKEIMNIV ACEGSERVER PETYKQWQAR NVRAGLRQLP LDPEIVKHVK NKVKREYHKD 660 FSVDEDGKWM LQGWKGRVIH GLSYWIPTSK

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MNTIVHQYPV AVEEFQFSHH AIPNFLEENF NNNFDGFPVS TKGSPSPPAD ESSSEGESST  60
EIDHSDAMLR FINHMLMEEV DLENKPCMLL DSLALQATEK SLYDVLNYDV GENPGSQSEN  120
FTKSTSNCVS ARSSDATSFI ESNWNKLDSQ SFFGSSKRII SHGVFTMDGP LLNQYSVSNS  180
SSGNSDRKLI GDDFVSHSSE TKDDCTEIVG RDELDISPNS SKEKKNRGRG DGDCLEEHRS  240
RKQVADDLGE VEPLEIYDNV LLCSNTDNPL MPSHDEVKKS ESTKKSRKKD KSKESNKGNP  300
KGGRKRGGAK EVVDLRGLLI QCAQAVASFD IRTFNDLLIR IRQHSSPLGD GSERLAHYFA  360
DALEARVAGT GTERYAAISS RRISAAMILK AYKTFITACP YRKISNLFAN KTIKKLATKA  420
TRIHIIDFGI LYGFQWPCLI QSLSERTEGP PNLRITGIDF PQTGFRPAER VKDTGHRLAE  480
YCERFNVPFE FTAIAQKWET ITLEDLRIDK NELLVVNSLY RLQNVPDETV IVNSPRDVVL  540
DLIRKINPDL FIHGIINGTF NTPFFITRFR ETLFHFSSMF DMFEATIAQE DPERLLFEEH  600
IFGKEIMNIV ACEGSERVER PETYKQWQAR NVRAGLRQLP LDPEIVKHVK NKVKREYHKD  660
FSVDEDGKWM LQGWKGRVIH GLSYWIPTSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-49	319	641	8	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV28807.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089500.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2Z7B5G1	0.0	A0A2Z7B5G1_9LAMI; Scarecrow-like protein 33-like
STRING	PGSC0003DMT400063769	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-175	GRAS family protein