PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28804.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 668aa    MW: 74586.3 Da    PI: 9.168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28804.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.5e-08561610147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       KZV28804.1 561 RRPFTVTEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 610
                      679***********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.57E-6368448IPR029071Ubiquitin-related domain
PROSITE profilePS500539.221369439IPR000626Ubiquitin domain
PROSITE profilePS5129416.256556615IPR017930Myb domain
SMARTSM007171.6E-7560613IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10561611IPR009057Homeodomain-like
SuperFamilySSF466898.12E-16562643IPR009057Homeodomain-like
CDDcd116603.36E-17562612No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MVLQKRLEYG FSGYQVPPIP RAARSARRRR SFESKTNGNQ MYAFDLLATV AGKLLSEGES  60
SSPSVDSFSL KGQLALVQDS VGRQEKSEEK LLEGKSGDQD FYERNFLFTD IVTDNPISDI  120
RSDELEFAQN DSISKPNCPG KGDSAEHLVN DDCKLRLGIF TPANLESSGC RLSCNSGSDE  180
ECRKPRNFSV TNRADMLDSQ HLTSGLVSSV DSVKFLICRD HSPSGSAPVN RENVKLAIID  240
DDESSPACTE SSTRTKKFRP SLRVSNIHGQ KLLSSKPCKA TPNVKDHDRA VTERCNYLNR  300
KRIIKHQRSL RDYPFKKRKF YDFVSNSDEG ICCDRMCASP ENGTNISALG SRPSLQREVL  360
IWHVAFGSVK LKIKSFRVPE LFIEVQETTT IGSLKKTVLE AVNAILGGGL RVGVLLQGKK  420
IRDDTQTLLQ TGISHDNKMD ALGFTLEPNP HIAPSSQLCP DDHSCQLLHN NPRPVTRYPL  480
SPNVPRTAIR DRNLDTPPDL SENNLNSLVE SDHDSAPDSS LKIPGAQSKA LVPVPSIERD  540
ALAVVPLRKC KRSDSSQRRI RRPFTVTEVE ALVQAVEKLG TGRWRDVKLR AFDSAKHRTY  600
VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLTAHAY WSQQQAKQHL KSSSILTFFS  660
ENSRCTNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-565486564112Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299318RKRIIKHQRSLRDYPFKKRK
2309318LRDYPFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28804.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089486.10.0telomere repeat-binding protein 2
RefseqXP_011089488.10.0telomere repeat-binding protein 2
TrEMBLA0A2Z7BAH70.0A0A2Z7BAH7_9LAMI; Telomere repeat-binding protein 5
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-126TRF-like 2