PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV28741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25267.8 Da PI: 9.5097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.8 | 2.7e-33 | 15 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF+Ptd+e+v +yL++k+ + +l++ ++i+e+ i ++ Pw++p + +++e yfF+++++ y + +r+ t++g+W+a g k+++s+ + KZV28741.1 15 LPPGFRFQPTDKEIVFQYLARKIFSYPLPA-SIIPEITISSSGPWSFP--TGDSDQERYFFINKAN-YGNRERAVIPTRAGFWRAMGPGKRIVSSkTMP 109 79****************************.89***************..5567899*****9866.8888899999***********99999973445 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+k+tLvfy+g p+ ++tdW+mhey + KZV28741.1 110 LVGIKRTLVFYEG--PN-TRTDWIMHEYCV 136 6**********65..44.57********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-36 | 13 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.311 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-20 | 16 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEKFSFIKDG VTSKLPPGFR FQPTDKEIVF QYLARKIFSY PLPASIIPEI TISSSGPWSF 60 PTGDSDQERY FFINKANYGN RERAVIPTRA GFWRAMGPGK RIVSSKTMPL VGIKRTLVFY 120 EGPNTRTDWI MHEYCVTALT TAACTIQQKK KISPGSLVPI GNWVLCHLFM KKTSEYKGRI 180 EQSAGLGSYS SSSSTSSASN SSMDSDSSSI ITEVSSDIVP DDESVARI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-24 | 15 | 177 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-24 | 15 | 177 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-24 | 15 | 177 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-24 | 15 | 177 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-24 | 15 | 177 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-24 | 15 | 177 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV28741.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073111.1 | 1e-66 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A2Z7B2Z8 | 1e-167 | A0A2Z7B2Z8_9LAMI; NAC transcription factor 25-like | ||||
STRING | PGSC0003DMT400011069 | 7e-62 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-47 | NAC domain containing protein 83 |