PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV28481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 151aa MW: 16199.4 Da PI: 11.955 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.3 | 1.9e-36 | 54 | 126 | 5 | 77 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++ +a+++++ + KZV28481.1 54 SSSNKDRHTKVNGRGRRVRMPALCAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAEAVSTTT 126 6789*********************************************************999996652222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-31 | 56 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.845 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MTSSHMVLRQ VSHSDSPPPL STTAVHVLPP PSAASAMESK SKIGALSKRV STGSSSNKDR 60 HTKVNGRGRR VRMPALCAAR VFQLTRELGH RSDGETIEWL LRQAEPSIIA ATGTGTVPAE 120 AVSTTTGTLP ASRSTDSTHG RLPRWRILWT P |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV28481.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077331.1 | 2e-45 | transcription factor TCP11 | ||||
Swissprot | O23875 | 4e-37 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
Swissprot | O64647 | 1e-35 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A2Z7B2B8 | 1e-103 | A0A2Z7B2B8_9LAMI; Uncharacterized protein | ||||
STRING | XP_002519510.1 | 4e-43 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-38 | TCP family protein |