PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28461.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 326aa    MW: 35641.6 Da    PI: 10.367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28461.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016127149123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+ksFs+   L  H  +H
  KZV28461.1 127 YRCKTCNKSFSSFQALGGHRASH 149
                 9***********99999998887 PP
2zf-C2H212.50.00045202224123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F +   L  H+r+H
  KZV28461.1 202 HQCSICGAEFASGQALGGHMRRH 224
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-9126149No hitNo description
PROSITE profilePS5015710.138127149IPR007087Zinc finger, C2H2
SMARTSM003550.025127149IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-12127151IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-9197224No hitNo description
PfamPF139125.1E-12201225IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533202229IPR007087Zinc finger, C2H2
SMARTSM003550.008202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQIQQETAMV AEDCNDAMKG KRGKRSRSSG SPLALTMATS SSSTANIGSE GGGQSTGSSV  60
LSDISASSDH YLTLTSREFK HRQEEEEEED MANCLILLAK GRRQVSSPRF PAAANKGTVA  120
AGDAELYRCK TCNKSFSSFQ ALGGHRASHK KPMIKPLTTT VEDQNPLAEI KEERVGRTIL  180
SFKIRSRSLA MCGGTLNKSR VHQCSICGAE FASGQALGGH MRRHRPLPPS ENSSHSESRE  240
EKKPGKMLLL DLNLPAPEEL VYVSVSSKSR RGKSSFRKTK LPEKCALVAA IVPKIQRRQI  300
TKCSTTPCNG SEQKKLSNFL RMRREI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28461.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022899641.11e-67zinc finger protein ZAT5-like
SwissprotQ681X46e-35ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A2Z7B2A20.0A0A2Z7B2A2_9LAMI; Nucleic acid binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-35C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]