PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV28360.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 516aa    MW: 58282.8 Da    PI: 8.0726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV28360.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025452474123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C+++F++   L  H r+H
  KZV28360.1 452 HVCPFCDRVFKNGQALGGHKRSH 474
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.494943IPR007087Zinc finger, C2H2
SMARTSM003551.1931IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-7931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003554.792114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139121.0E-494116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-6380402No hitNo description
PROSITE profilePS501579.494380407IPR007087Zinc finger, C2H2
SMARTSM003556.3380402IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-7380404IPR007087Zinc finger, C2H2
PROSITE patternPS000280382402IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-6447474No hitNo description
SMARTSM003550.015452474IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141452474IPR007087Zinc finger, C2H2
PfamPF139126.0E-8452474IPR007087Zinc finger, C2H2
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEEDQDMRFV CKSCNKRYPC GKSLGGHMRS HVIANSSHSD EKFEPNSTGQ QHIMSESKVA  60
EFGNGQSAYG LRENPRKTWR AVDSTFPIVQ ERFCKRCGKG FQSMKALCGH MACHSEKDRG  120
LNDDHSWTSE SQKMVFDSYS DTEEGDDFRL RTRSSKSKKC KKLDVKFPSF SLPNNCSSSV  180
SEIDGRNQEE VAMCLMLLSK DSGNKGGVNS VVESSDNNSV VLETKSSSID MRFGKKKGTN  240
GVCIGEEAPQ VKNIGDRKLK ETSLNVEIAK VENSDSGYFL DECAKADSDA SVGRGIEEYD  300
AEFGMSVNRI KNFRTELRND LIKEIEYDNS AIASKFARME SRKRKYSYED PDSWNETIRS  360
MKYGNVEGEA CSNSQKRSKY ECFNCKKTFK SYQALGGHRP CHKRSNAYDE SRYESDENIL  420
DDFSDIQTTG NKKPSAKSSS KLKIKPKKNK GHVCPFCDRV FKNGQALGGH KRSHFIVSND  480
ETQNQSRRQK AELHNLLDLN LPAPEEDEDD GRGRFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV28360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075585.10.0uncharacterized protein LOC105160026
TrEMBLA0A2Z7B3140.0A0A2Z7B314_9LAMI; Uncharacterized protein
STRINGMigut.L01205.1.p1e-159(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-58C2H2-like zinc finger protein