PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27602.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family FAR1
Protein Properties Length: 598aa    MW: 69669.7 Da    PI: 6.8401
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27602.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.76.8e-2218109190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +++ ++A++ GFsvrk++s+ s + g ++kr+fvC+++g++ ++kk+t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  KZV27602.1  18 EYFGKFARKNGFSVRKERSRLSPQLG-VYKRDFVCYRSGFAPTRKKQTGEHQRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNIHNHELL 109
                 5899******************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1918109IPR004330FAR1 DNA binding domain
PfamPF105516.2E-14192279IPR018289MULE transposase domain
PROSITE profilePS509668.84469504IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-5476500IPR007527Zinc finger, SWIM-type
SMARTSM005750.0019479506IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MVSPYVGMVF KSDDLAFEYF GKFARKNGFS VRKERSRLSP QLGVYKRDFV CYRSGFAPTR  60
KKQTGEHQRD RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNIHNHELLE DDQVRDVRNF  120
IQNHKKVIQQ NDALLMEKRE NDARELLEAC RASKEADPYF VYDVTIDEKD NVENIAWSYG  180
DSVHAYDLFG DVVHFDLTYH SMTYGMLFGA WLGIDNYGKI IFFVLLQDES PRSYAWALQV  240
FLRFMKGRNP QAIITDIDTG LGEAIRSELP NTKHVISLHS ILPRISSWFC LPLGPRFREF  300
RYEFEALYSL ESTDDFEFRW NQMVSHLKLD SDKHIALLFT LRTSWAFPYV RGCFLAKMVS  360
STFWKSVDDF FHGVFEGQTC LRGIFEQVCL LYLEHTLISN YKLHAHVEPR CMHLKTCLPL  420
EKHARSLLSP FAFKALQEEL ALAMQYAAAE MVPGSYLVRH FKKIEGERLV IWIPELEHIH  480
CACNEFESSG ILCRHALRVL VLKNYFQLPN KYFLGRWRRE SSLNCHNEQS NLSFKDEWYE  540
EFNSLTGTLF SEALLSKERS DFVHSELTKD LTRLITLVRD MPTVDEVVDV TLPPAQGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095923.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2Z7AZW80.0A0A2Z7AZW8_9LAMI; Uncharacterized protein
STRINGMigut.M01435.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]