PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV27495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 340aa MW: 38235.2 Da PI: 8.4957 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 115 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++Cg+ F ++L++H+++ H KZV27495.1 115 FPCTICGEIFQKLYLLEQHQSVkH 138 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.328 | 115 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.63E-14 | 148 | 339 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 6.1E-4 | 153 | 248 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MAKFPLFVAN FFSCLVLLLH LGCFFTVPRR HHRRRSNSSS FSSFKKKLTP SSKSRLASLL 60 RRLFFLPPSS DQMHHPSSIP SPSSSTRSLR LNPPAIVFPM EENSSTPFLP SDDIFPCTIC 120 GEIFQKLYLL EQHQSVKHAV SELVDGENIV RIIFKTGWPE KGKPPTIHRI LKIHNTSKIL 180 TKFEEYREYV KSKAAAKIKP SRDERCVADG NELLRFHCTT FMCELSDSTI CNHQYCCVCG 240 IIRCGFSSKM DGISTFPTSW TAHTAVPEDI EEEFGFMNVR RALLVCRVVA GRVGCDPGIV 300 DKEDSGFDSL VGRGSGGFEE ELLVFNPRAV LPCFVIVYTA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV27495.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078217.1 | 1e-144 | uncharacterized protein LOC105162016 | ||||
TrEMBL | A0A2Z7B704 | 0.0 | A0A2Z7B704_9LAMI; Uncharacterized protein | ||||
STRING | XP_009773098.1 | 1e-131 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11834 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 2e-81 | C2H2 family protein |