PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV27286.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family FAR1
Protein Properties Length: 682aa    MW: 78253.4 Da    PI: 8.1041
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV27286.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.72.9e-2162155190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  + ++++k +r+r+++r+gC+a ++++k++      w+vt + ++HnHel 
  KZV27286.1  62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPLKASNENKPQRNRKSSRCGCQAYMRISKSTelgVPDWRVTGFANHHNHELL 155
                 6**************9998877356667999*****************9**********************99777789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1762155IPR004330FAR1 DNA binding domain
PfamPF105512.7E-19278369IPR018289MULE transposase domain
PROSITE profilePS509669.767556589IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-7559587IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MSEEVGQMML VYDDPSDRRS LSLDGTSSAD ESPDETRLSL ETANEMIPYI GQSFTTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPLKASNE NKPQRNRKSS  120
RCGCQAYMRI SKSTELGVPD WRVTGFANHH NHELLEPSQV RFLPAYRTIS ETDKNRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KVDPEDETID LLKMCRNIKD  240
KDPNFKFDFT LDPGGRLENI AWSYASSIQL YEFFGDAVVF DTTHRLTAFD MPLGIWVGMN  300
NYGMPCFFGC VLLREENLRS FSWALKVFLG FMNGKAPQTI LTDQNMCLKE AIGIGMPTTK  360
HALCIWLIVA KFPSWFNAVL GERYIEWKTE FYRLYNLEMT EDFELGWRNM VNAFGLHTNR  420
HIVSLYALRS LWALPYLRSH FSAGMTTASE SKSINSFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNIQNISL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASYQMEDG  540
FLVRHHTKLE GGRKVYWVPR EDIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPDRYLLL  600
RWRRINIPSN RHQNLQAIRN DHAERVQLLQ NVVSTLISES AKSNDRLDLA TEQISMLISR  660
IREQPVSSIG LRELSSAHRS LT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV27286.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087634.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2Z7B1150.0A0A2Z7B115_9LAMI; Uncharacterized protein
STRINGEMJ263580.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]