PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV26310.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TALE

Protein Properties

Length: 622aa MW: 67991.5 Da PI: 9.0008

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV26310.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	402	439	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + KZV26310.1 402 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 439 554459******************************88 PP
2	BELL	101	8.9e-33	265	336	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq++q+kk+kL+++leeV++rY+qy+ q+q+vis Fe++ag+ sak Yt+lAl++iS++ cLkdai+ qi KZV26310.1 265 ERQQIQMKKVKLVNMLEEVEQRYRQYHYQMQMVISWFEQAAGISSAKTYTALALQTISKQLLCLKDAITAQI 336 799*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.7E-52	190	334	IPR006563	POX domain
Pfam	PF07526	1.8E-40	195	333	IPR006563	POX domain
PROSITE profile	PS50071	12.26	380	443	IPR001356	Homeobox domain
CDD	cd00086	2.85E-12	383	444	No hit	No description
SMART	SM00389	1.8E-9	383	447	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	384	450	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	386	450	IPR009057	Homeodomain-like
Pfam	PF05920	4.1E-18	400	439	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence Send to blast
MATYFHEKSE IQGNGDGLQT LFFMNPAYAG FSDSHQPPTA SSNFVFLNPN SSGNTLRLPQ 60 APPTQSQHFV GIPFNGAAAT TTSAASTQDT NQHDVSPALQ LQGFLPLVHY NNPYGQTVDL 120 AAAREATRPQ QGLSLSLSYR YPPWGYGSFR RGSDATAKPL VTAVSRRLED DAKASGGSTS 180 PASGVSNAGN GVQSVILSSK YLKAAKELLD EVVKVGRGTK SRAELPAGEQ PIKTGDLGGA 240 TVVTGVDVGG DKGGKKHGAE LSTAERQQIQ MKKVKLVNML EEVEQRYRQY HYQMQMVISW 300 FEQAAGISSA KTYTALALQT ISKQLLCLKD AITAQIRASS KSLGDEDGSL AGEIEGSRLK 360 YVDNQIRQQR ALQHLGLIQQ NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKVMLAK 420 QTGLTRSQVS NWFINARVRL WKPMVEEMYM EEIKEQGKNG SEEKSIKTEQ NEVLTSKSTA 480 PQSKNPAAIL NQNQGLTSKV DNPINHTTAA DSLATSTALM FPPGFKSNPG FLFKLDHHPK 540 WEPLLKEVPR KHMGELGTYE ADHVHAPFLG NGVSLTLGPP HSHQNFMPNQ SIELGRGVEI 600 GEPNDLSSMN STPNSYTLNH CM

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence Send to blast

MATYFHEKSE IQGNGDGLQT LFFMNPAYAG FSDSHQPPTA SSNFVFLNPN SSGNTLRLPQ  60
APPTQSQHFV GIPFNGAAAT TTSAASTQDT NQHDVSPALQ LQGFLPLVHY NNPYGQTVDL  120
AAAREATRPQ QGLSLSLSYR YPPWGYGSFR RGSDATAKPL VTAVSRRLED DAKASGGSTS  180
PASGVSNAGN GVQSVILSSK YLKAAKELLD EVVKVGRGTK SRAELPAGEQ PIKTGDLGGA  240
TVVTGVDVGG DKGGKKHGAE LSTAERQQIQ MKKVKLVNML EEVEQRYRQY HYQMQMVISW  300
FEQAAGISSA KTYTALALQT ISKQLLCLKD AITAQIRASS KSLGDEDGSL AGEIEGSRLK  360
YVDNQIRQQR ALQHLGLIQQ NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKVMLAK  420
QTGLTRSQVS NWFINARVRL WKPMVEEMYM EEIKEQGKNG SEEKSIKTEQ NEVLTSKSTA  480
PQSKNPAAIL NQNQGLTSKV DNPINHTTAA DSLATSTALM FPPGFKSNPG FLFKLDHHPK  540
WEPLLKEVPR KHMGELGTYE ADHVHAPFLG NGVSLTLGPP HSHQNFMPNQ SIELGRGVEI  600
GEPNDLSSMN STPNSYTLNH CM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-16	389	447	5	63	Homeobox protein Meis2
3k2a_B	7e-16	389	447	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV26310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553279.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-129	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2Z7AZB4	0.0	A0A2Z7AZB4_9LAMI; Uncharacterized protein
STRING	XP_009787672.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1478	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-114	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]