PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV26027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 26922 Da PI: 6.9824 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF++ L H ++H KZV26027.1 101 YQCKTCNKSFPSFQALGGHRSSH 123 9***********99999999988 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00072 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H KZV26027.1 163 HECSLCGAEFTSGQALGGHMRRH 185 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.73E-9 | 100 | 123 | No hit | No description |
Pfam | PF13912 | 4.7E-12 | 101 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.118 | 101 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.73E-9 | 158 | 185 | No hit | No description |
Pfam | PF13912 | 3.2E-12 | 163 | 187 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MQGEEEAVIM IKGKRSKRPR PSSPLGLAIL ATSSSSTTDR HGGGGSVSVE FSGCSAYSGD 60 QLTPSSADEE DEDLAHCLIL LSGGGQSRES SQPRVAVAEL YQCKTCNKSF PSFQALGGHR 120 SSHKKTSNKP MIFIDEKPPS ISRNKQESSL SAFDTGSSKC RIHECSLCGA EFTSGQALGG 180 HMRRHRPIPQ PASSSHGESQ EVKRPRNLLS LDLNLPAQED IDRAEQSSFP LASKEEVIVF 240 SNSSLIDCHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 20 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV26027.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077299.1 | 8e-87 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2Z7B3A6 | 0.0 | A0A2Z7B3A6_9LAMI; Nucleic acid binding protein | ||||
STRING | XP_006493540.1 | 2e-62 | (Citrus sinensis) | ||||
STRING | XP_006428462.1 | 1e-62 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 9e-51 | C2H2 family protein |