PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV25136.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 269aa    MW: 29957.2 Da    PI: 5.2121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV25136.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195678123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  KZV25136.1 56 YSCSFCRREFRSAQALGGHMNVH 78
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-65383No hitNo description
Gene3DG3DSA:3.30.160.607.9E-45482IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.9E-55680IPR007087Zinc finger, C2H2
SMARTSM003550.00985678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6555683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEGARYWMWA KTTADPNTQI LSAAATNSFS DSWEEQAFAF DAAGTLGGCV WPPRSYSCSF  60
CRREFRSAQA LGGHMNVHRR ERARLKQSPT TDQVAASYTS QISSLLYKNP NPEISDTWAV  120
SDSRNISIRN PSPPATKDTS ALCFFSPFLQ QNLKNITVSS ITDEKDHVLD SIKDQEKSPY  180
TIEPNSTEDC SKLDLSVSLT LEVCPTDTNG SNDEEVGGCK RRRFESKPLN FVQQSSKKGR  240
FQTDVFTMPS GSEEELDLEL RLGDAPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135178229superman protein
2l1o_A4e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV25136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094902.15e-93zinc finger protein 10
TrEMBLA0A2Z7AUT10.0A0A2Z7AUT1_9LAMI; Zinc-finger protein 10
STRINGMigut.J00299.1.p2e-57(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-25zinc-finger protein 10