PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24998.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bZIP
Protein Properties Length: 180aa    MW: 21412.7 Da    PI: 6.1163
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24998.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.59e-1688138555
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                 +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++ 
  KZV24998.1  88 RKQRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLIDKLNHVSED 138
                 689******************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-1484148IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.73786149IPR004827Basic-leucine zipper domain
PfamPF001702.1E-1388138IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-1188160No hitNo description
SuperFamilySSF579599.38E-1488138No hitNo description
CDDcd147022.59E-1789140No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQQGELLSEL EYLFHRNSTC FHPYSSYMIN NNNMAPAHDH LHTFSNPLHQ LNISPQVREF  60
NPQSACLSSN NSTSDEAEEQ QFSIINERKQ RRMISNRESA RRSRMRKQRH LDELWSQVVW  120
LRNENHQLID KLNHVSEDHD RVVQENVQLK EETSELRRMI TDMQLSSPYS SLIEELHDDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099071.11e-74basic leucine zipper 43
SwissprotQ9FMC22e-46BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2Z7AUF01e-129A0A2Z7AUF0_9LAMI; Basic leucine zipper 43
STRINGXP_010694542.11e-70(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-58basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]