PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24985.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 270aa    MW: 30752.3 Da    PI: 8.2431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24985.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.1e-17894397
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                k l++ d ++ ++l+lp +f+e+h ++    ++ tl+ e+g+sW v++  ++ ++++++t+GW++F+++  L+ + f++F++dg+s+f  +v+v+
  KZV24985.1  8 KLLITDD-FN-SQLRLPPQFVEDHAEIVL--RKATLRVETGESWIVRI--ERIGEHHFFTEGWEKFASDVALEFKQFLLFMFDGESGF--HVSVY 94
                5554433.33.45***********66633..479999***********..**********************************9999..88776 PP
2B336.77.4e-121632351487
                 T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   l +p++fae+ g+  e+++   l+++s+++W v ++ r++ +++ +t GW++F    ++++g +++F++ ++
  KZV24985.1 163 TELEVPRDFAETTGIA-ENGRIFLLTQPSSKKWPVIVTARRREESFAMTVGWNDFLVGRKVRVGSTILFEFLSN 235
                 45889*****888766.5667888999**********99*******************************7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.857497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-18499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-19599IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-11594No hitNo description
SMARTSM010195.5E-14697IPR003340B3 DNA binding domain
PfamPF023621.7E-14793IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096150249IPR003340B3 DNA binding domain
SMARTSM010190.0035153247IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-11157237IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-8163236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-11163236IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-9165232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMASSFYKLL ITDDFNSQLR LPPQFVEDHA EIVLRKATLR VETGESWIVR IERIGEHHFF  60
TEGWEKFASD VALEFKQFLL FMFDGESGFH VSVYEMSGCK KELVVCNDTS GGSEHHGYGV  120
STDGDLAVKP EIVDEDVRIV EDHGLLAVKQ LRFRAKLGKR NETELEVPRD FAETTGIAEN  180
GRIFLLTQPS SKKWPVIVTA RRREESFAMT VGWNDFLVGR KVRVGSTILF EFLSNRDDIV  240
IGAKVVKNGK MALYSPKKRR GRPPKLQVLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AT140.0A0A2Z7AT14_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-15B3 family protein