PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV24857.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 556aa    MW: 62825 Da    PI: 7.7314
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV24857.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.4e-15501271497
                 T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   l+lp kfa++  +++   +++ ++ed++g++W v+l  +  +g+  +++GW +Fv++++L+ g+ +vF ++++  f  vv+++
  KZV24857.1  50 EVLYLPPKFARDVrDLV---GQETQIEDSNGEKWAVRL--SYVDGALAFREGWHKFVEDHQLEFGENLVFNYKRHGHF--VVQIY 127
                 569*******9997555...45899*************..77888899************************987777..88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-2236132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2036132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.76137130IPR003340B3 DNA binding domain
CDDcd100176.01E-1537127No hitNo description
SMARTSM010192.7E-1439130IPR003340B3 DNA binding domain
PfamPF023622.2E-1350127IPR003340B3 DNA binding domain
PROSITE profilePS508638.98452550IPR003340B3 DNA binding domain
SMARTSM010190.081457550IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-9471549IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-9485550IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MVRQMFRRGI VPCDECTKKC LTIHHHRDRK GPSFTERRFF KIVVGENWSE VLYLPPKFAR  60
DVRDLVGQET QIEDSNGEKW AVRLSYVDGA LAFREGWHKF VEDHQLEFGE NLVFNYKRHG  120
HFVVQIYGLS ACEIMDFNRG RKLSKKRSRS DQETVYQDEP HEIRNKRSAL TSENMEDPSC  180
ILNRDSGKYE VEDRQFLFDL SNFEMGKNSS VAEKSETSLD RNITPVESHI REQIEVVRND  240
TRMSMPLTDQ KNNHLCGISA DAFQTAPRSD CNSGKDMPHD VSKFQVGKTE NNCLHRIPLE  300
SLENNPFGDS DSRKDMTDAI KFRTSGTNNY QPCGMFSCAF PAKPSGNSNA SKDTFDDISK  360
FLACDSVKDM FNDVSKFLAC ETGVSTPFVV RGKLAATSKK EVVKEGEEVY GFTRVSSVDA  420
GLVSTLEMKC GQSSFSCVKP EPVMDDVLAP AVATSPFSAE VKSLTFVELP LGMPSIQGKR  480
EQGRDKVVYL RSSTAGLWPV LYLGKSFVRA FTGGWKTFCK GNSIRAGYVC RFQVETYKPC  540
VFRVDIIRKA GESSDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV24857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7B0140.0A0A2Z7B014_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-15B3 family protein