PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23339.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 291aa    MW: 32601 Da    PI: 6.917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23339.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047220242123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C ++Fs+   L  H r+H
  KZV23339.1 220 HKCGICLRVFSTGQALGGHKRRH 242
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5775986IPR007087Zinc finger, C2H2
PfamPF139127.8E-85983IPR007087Zinc finger, C2H2
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.71E-86081No hitNo description
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-46181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.71E-8157184No hitNo description
PfamPF139121.8E-9162185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242162189IPR007087Zinc finger, C2H2
SMARTSM003550.47162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
PfamPF139121.5E-11219244IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787220247IPR007087Zinc finger, C2H2
SMARTSM003550.88220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDNRSSDFHP STMFSLVPFR QEPAAPFAKQ NPRKKRTKII AAACKYTRKP DPSAPKITRP  60
CTECGKRFWS WKALFGHMRC HPEREWRGIN PPPNLSRHHD SEDSSAVTEE DHELASCLLL  120
LANGDDDQES LSTACTSVNL DYFYHYHSDN NNHNNGSNDR GFECSSCKKV FGSHQALGGH  180
RASHKNVKGC YAIAMNNADD QEHSIEGDDS IHDNQTIPVH KCGICLRVFS TGQALGGHKR  240
RHWEKAAVEE AGGFDLNFPN VHGEDQEYAS SYSSIDSAGL RHPELDLSLR L
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23339.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872902.12e-82zinc finger protein ZAT3-like
RefseqXP_027091866.12e-82zinc finger protein ZAT3-like
SwissprotO654993e-73ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A2Z7AV790.0A0A2Z7AV79_9LAMI; Uncharacterized protein
STRINGEOX974462e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA638556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-75C2H2-like zinc finger protein