PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23278.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 493aa    MW: 55851.6 Da    PI: 8.5852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23278.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0598118323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C+ Cg+sF ++  L  H+++H
  KZV23278.1  98 CKECGRSFQSWKALFGHMKSH 118
                 ********************9 PP
2zf-C2H212.10.0006399421123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F++   L  H r+H
  KZV23278.1 399 HECPICFKVFPSGQALGGHKRSH 421
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-8931No hitNo description
SMARTSM003550.18931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785936IPR007087Zinc finger, C2H2
PfamPF139122.4E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-891118No hitNo description
SMARTSM003550.02496118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03496119IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139121.2E-798118IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-6330352No hitNo description
SMARTSM003550.34330352IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224330357IPR007087Zinc finger, C2H2
PfamPF139121.1E-10330354IPR007087Zinc finger, C2H2
PROSITE patternPS000280332352IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-6394421No hitNo description
SMARTSM003550.074399421IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-12399422IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974399421IPR007087Zinc finger, C2H2
PROSITE patternPS000280401421IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEEDQELKHI CKFCSKSFPC GRSLGGHMRS HLINIPSDQT KKNNHKVEKK KLPLHTNGRN  60
NARIDEIIVF GSRVSSSNTG KFSKSIKEVD TLLQRKLCKE CGRSFQSWKA LFGHMKSHSL  120
SGRIEKIVED DCQDSSDDHG KIAMDSYSGN EADAPFWKKK RSDRLKGSKS TSNSSSLVDF  180
PSYVSDIDQQ EQEAVALSLI MLSRDARKWD GMHSFDSSNN NSELLEAKII GEVVEKNSKT  240
GEFLKFKELK NGKIDSVVKT PHPRNEFRSS RNLIKKSELD LLEEQDIKKS NKRKFTDSSD  300
SDLTLPVENY KFSSSYDPFD SEDFEKYSKF LCTICRRSFP SYQALGGHRA SHKKFKGCCA  360
PRSENTDYSP VQSDQSSKNV REFRAKTASE VGLKKGKDHE CPICFKVFPS GQALGGHKRS  420
HLITNQTKSS HPSTTPPHKS TLEIRNFLDL NMPAPVDEEC NDFKSWWIGI SHEQEHDHSQ  480
NNENEPLLGL ISS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23278.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.11e-130zinc finger protein ZAT4-like
TrEMBLA0A2Z7APE90.0A0A2Z7APE9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-33C2H2-like zinc finger protein