PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV23174.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 1646aa    MW: 185159 Da    PI: 6.7565
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV23174.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-07210229626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 Cr f + G C++G++C+F H+
  KZV23174.1 210 CREFVA-GSCRRGSQCRFLHP 229
                 999999.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.605204231IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4210228IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4210229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483289316IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001294314IPR000571Zinc finger, CCCH-type
SMARTSM003560.11338363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685338364IPR000571Zinc finger, CCCH-type
PfamPF025761.8E-810221099IPR003728Ribosome maturation factor RimP
Gene3DG3DSA:3.40.50.18207.1E-14412011641IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534742.24E-11512031636IPR029058Alpha/Beta hydrolase fold
PfamPF004507.8E-12912111633IPR001563Peptidase S10, serine carboxypeptidase
PRINTSPR007241.6E-2312861298IPR001563Peptidase S10, serine carboxypeptidase
PRINTSPR007241.6E-2312991309IPR001563Peptidase S10, serine carboxypeptidase
PRINTSPR007241.6E-2313341359IPR001563Peptidase S10, serine carboxypeptidase
PROSITE patternPS00131013481355IPR018202Serine carboxypeptidase, serine active site
PRINTSPR007241.6E-2316031616IPR001563Peptidase S10, serine carboxypeptidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0042274Biological Processribosomal small subunit biogenesis
GO:0005618Cellular Componentcell wall
GO:0004185Molecular Functionserine-type carboxypeptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1646 aa     Download sequence    Send to blast
MSERRKRKSF WDTEEEAKHL SGMNEPNSWS VKERHANYDD RRYHGLPSSG TSSIQKSIDN  60
SGRASWETNE ENPTVLTGDG FVKRRQDASE VKDISGISRY YKDMSPGFDG TERRTCNNSF  120
EDDRSHSRRY PARGRSRSRG RTSGRSRSRS LSRSRGRERE RGRGWSRSRS RSNDSARGLS  180
RSRSPVEDYR RQSYGWSDRT RCPDKSSQSC REFVAGSCRR GSQCRFLHPS NISHRDGDHL  240
EDDPAESWRN KVDRIRTSKH SYNRGPEYEM LDDDSEPNRG KGDQFLTKNR NAFPCKDFMR  300
GYCRWADSCR FSHHSSSGES FGKSFSVRSF DSGHQSNQYE KPMCKFFAAG KCDRNNCRFS  360
HEVTSRGSFH DKNNWSDNAA RVLDAVTTVR WGEKNVADTQ SSCDISNEVG TGIKMRTKLW  420
GIPEWKEKPS NREKQPSPPR GSSSHDQGIG YTESMAKAAS VANKLEQLIV LNSQLQNQDE  480
ALNVQQRNSL QGDHSFSHKA LQQNSSSTSH IQQQHTEMLQ NDLVSQFVSG VLDGVKNSQK  540
TTRPDIFPGQ SLNADGERRL LGHSSISNET IRGRSMLYPM LSDEVVDLNL AESKIVPPLT  600
LQAESPNHQK AIKSPKMSES KVLQFFPNLL TNEHSTQVTN SVVIPDQPVV HVTEYPVTFL  660
GQRVVTEQAQ AYQSIDPSNS IRVIPSFTDT QLHVPLVNSM NVQMKPVTVS HDLFNPSENV  720
RNEGELRNRC LVPETDQNSQ IHVKQTSPLS AGMEVDNLKV NHEENVTVKQ DEVTAKPETE  780
VLVEQNKDDK ENKASETLDG HGKNEGGNAT KDEKGMRLFK NALVEFVKEI LKPTWKEGRM  840
SREVHKTVVK KVVDKVTGTV QADHIPKTQE KVEHYLSCSK PKITKLVQVC PCHLLLNSSQ  900
CGHFEAKTRP SVALAKKKDS EVEPVVKPSI VEEVSLDEGC DDIEDDSFLA EFENEEMVNE  960
EGYFEDDCFE EEAEPSVGDG AGGGGISLAG TGWDKKALEI AEEVAMSFDG KLGIYAFRTL  1020
LNATIQVRIE RLTNKSGSPT MMDIEKFSTE YRERLDDAES AGSIPENIAL EVSSPGVERV  1080
VRIPEDLARF KERNMYVKYV TGAMETGSSS EHDGIFRLIS FDSDAKSCTW GLADFGFTLT  1140
YEHHFEEWEA AESWRPSKLE PLAKRVVLVE FFEMGLRLNS IPAYVAVVVM GLLFGGCLGF  1200
PEEDLVVKLP GQPVVKFRQY AGYVDVDVKK GRSLFYYFVE AEEDPDHKPL TLWLNGGPGC  1260
SSIGGGAFTE LGPFFPTGDG RGLRINSKSW NKASNLLFVE SPAGVGWSYS NTTSDYTTGD  1320
ASTANDMHIF LMGWYKKFPT FKTRDFFLTG ESYAGHYIPQ LALVLLDHNK HSKELKFNIK  1380
GIAIGNPLLK LDRDIPATYE FFWSHGMISD EVGLAIMNDC EFEDYTFATP HNVSNSCNNA  1440
IATANKIVGD YINNYDVILD VCYPSIVQQE LRLRKMATKI SVGVDVCMTY ERRFYFNLPE  1500
VQKALHANRT NLPYSWSMCS SVLNYTEADG NINILPLLKR IVENHIPVWI FSGDQDSVVP  1560
LLGSRTLVRE LAHDLGFTVT VPYGAWFHKK QVGGWATEYG NILTFATVRG AAHMVPYAQP  1620
SRALHLFSSF VRGRRLPNTT RPSIDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bcr_A4e-67120414629258SERINE CARBOXYPEPTIDASE II
1bcs_A4e-67120414629258SERINE CARBOXYPEPTIDASE II
3sc2_A4e-67120414629258SERINE CARBOXYPEPTIDASE II (CPDW-II)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RGRSRSRGR
2152162RSRGRERERGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV23174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AN110.0A0A2Z7AN11_9LAMI; Carboxypeptidase
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-10C3H family protein