PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV22545.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WOX
Protein Properties Length: 271aa    MW: 30536.8 Da    PI: 6.5064
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV22545.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-202889257
                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  KZV22545.1 28 STRWTPTTDQIRILKDLYYNngLRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89
                58*****************8678*************************************97 PP
2Wus_type_Homeobox113.88.8e-372791265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +Glr+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
         KZV22545.1 27 SSTRWTPTTDQIRILKDLYYnNGLRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-112194IPR009057Homeodomain-like
PROSITE profilePS5007110.4952490IPR001356Homeobox domain
SMARTSM003891.5E-52694IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-72989IPR009057Homeodomain-like
CDDcd000864.62E-72991No hitNo description
PfamPF000462.2E-172989IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEPQNLQNPA SNDQETGKNS SFLCRQSSTR WTPTTDQIRI LKDLYYNNGL RSPSAEQIQR  60
ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTCDNIPM QYRNGVWKNE EIYNKFPNVN  120
SGSFPSSSVP SAPGLMNVGS SGNFGNGSFA VDRSFRDCSI APNPNTCGSM SQNFTWIGVD  180
PCSVTYPFLE KKNCYVNAEL QTLELEEDEA EDATPEIETL PLFPIHSNIK QETDYFNGGW  240
HHCSTVNGIA GTTASLELTL NSYAARFPNG P
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV22545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100154.11e-103protein WUSCHEL
SwissprotQ6YBV13e-89WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2Z7AL740.0A0A2Z7AL74_9LAMI; Homeodomain-like superfamily protein
STRINGXP_009792214.11e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-40WOX family protein