PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV22447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 41213.9 Da PI: 6.6014 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + KZV22447.1 11 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHS-N 107 69****************************.9***************964443122456************************************99.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +g++ktLvfy+grap+g+k+dW+mheyrl KZV22447.1 108 LRRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 139 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-57 | 7 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.84 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSLSVNGQSR VPPGFRFHPT EEELLHYYLR KKVAYEKIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIHSNLRR IGMRKTLVFY 120 RGRAPHGQKS DWIMHEYRLD DHVNSHASPA NVSNNITVDS GPEEGWVVCR VFKKKNYHKA 180 LDSPAPHMMA SSSSILNRNH AQNDVVLDHL LMYMGRSSSS CKQENETNSG ALYLPIQDPS 240 GFVHLPGLEN PTVHNILADV EASSSVKPDI QPGDWVTLDR LVASQLDGHV SKQFPVYDDP 300 SMDEDFSFSF SNNNNTNEIE LPNMHDNPDH ISPASLSSSD ADFWSFARTS SLSSSSTDPL 360 CHLSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-48 | 11 | 176 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV22447.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070696.1 | 1e-154 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-115 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2Z7ASV8 | 0.0 | A0A2Z7ASV8_9LAMI; NAC domain-containing protein | ||||
STRING | XP_009607557.1 | 1e-141 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-104 | NAC family protein |