PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV22153.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 241aa MW: 27558 Da PI: 6.3048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV22153.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.7	7.6e-43	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrF Pt+eelv++yL+ ++e +kle+ ++vi+ v+iy++ePw+Lpk +++++++w+fF+++++++a+ r+nr+t++gyWkatg+ +v+++ KZV22153.1 5 APGFRFYPTEEELVSFYLRSQLELEKLETiNRVIPPVQIYQFEPWQLPKqcgeLCQGDTEQWFFFVPKKENEARRGRPNRTTATGYWKATGSPSHVHAA 103 69*********************97762556***********646654445777*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +g+ +g+k+++vfykg+a +g+kt+W m+ey+ KZV22153.1 104 DGKSIGVKRSMVFYKGKAGSGRKTKWKMNEYT 135 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-43	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	45.163	4	160	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEEIAPGFRF YPTEEELVSF YLRSQLELEK LETINRVIPP VQIYQFEPWQ LPKQCGELCQ 60 GDTEQWFFFV PKKENEARRG RPNRTTATGY WKATGSPSHV HAADGKSIGV KRSMVFYKGK 120 AGSGRKTKWK MNEYTAIVQD SNTTVPKLRD EMSLCRVYIV SGSLRAFDRR PTTPGETSRG 180 KINIAVENGT EVLHVSRDEN SGDKNRSIGE TSNQLLECNK ENGGYEDMMF GLENLLELEW 240 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	4	158	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	4	158	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	4	158	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	4	158	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	4	158	20	166	NAC domain-containing protein 19
3swm_B	2e-30	4	158	20	166	NAC domain-containing protein 19
3swm_C	2e-30	4	158	20	166	NAC domain-containing protein 19
3swm_D	2e-30	4	158	20	166	NAC domain-containing protein 19
3swp_A	2e-30	4	158	20	166	NAC domain-containing protein 19
3swp_B	2e-30	4	158	20	166	NAC domain-containing protein 19
3swp_C	2e-30	4	158	20	166	NAC domain-containing protein 19
3swp_D	2e-30	4	158	20	166	NAC domain-containing protein 19
4dul_A	1e-30	4	158	17	163	NAC domain-containing protein 19
4dul_B	1e-30	4	158	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV22153.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022851387.1	5e-91	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-75	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2Z7AKB5	1e-180	A0A2Z7AKB5_9LAMI; NAC domain-containing protein 90-like
STRING	Migut.N02478.1.p	7e-90	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-77	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]