PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21848.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 347aa    MW: 38534.9 Da    PI: 9.0254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21848.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133254223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +C  C+++Fs+   L  H+++ H
  KZV21848.1 32 RCAQCPRVFSTGKALGGHMSSaH 54
                6******************9988 PP
2zf-C2H216.23e-0581103123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ CgksFs+    + H+r+H
  KZV21848.1  81 FTCKCCGKSFSSEKAVHGHMRLH 103
                 89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5593159IPR007087Zinc finger, C2H2
SMARTSM0035573154IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-63254IPR007087Zinc finger, C2H2
PROSITE patternPS0002803354IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-580106No hitNo description
PfamPF139120.00181105IPR007087Zinc finger, C2H2
SMARTSM003550.0481103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.44881108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-481103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGEEVQRGEG LEDSVVEKRA AIELGGKVKS PRCAQCPRVF STGKALGGHM SSAHGPSKKS  60
DSSPKNLKPK KNHESFQAGK FTCKCCGKSF SSEKAVHGHM RLHPERDRRA MKPPAEPEIE  120
NPVEILEDAT APVEDFIKNL RAKTVTGRRG RGGTKPHKID SPEIILAKKR ALLSGDPQEL  180
RRIMDHHDDS GYFRRAFGNY LDFLRPRIDT KTDIQDTGNN TGSEILDTNC TNSCNPLVCS  240
EKLMADSMSK DFFKICMKSS GVEEPEIPEH GNQFDGMENR LTGKKRKKMD SKFVENKIMV  300
KKMKTDDLHT AQGSYGHTCR LPDFSPPFSD LITGASGLLQ LCTKSRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287RLTGKKRKK
2283287KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7AKF40.0A0A2Z7AKF4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.17e-09C2H2-like zinc finger protein