PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21817.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 303aa    MW: 34092.5 Da    PI: 7.2681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21817.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+lvd++ + G g+W++ ++  g+ R++k+c++rw +yl
       KZV21817.1 14 KGPWTSEEDEKLVDYISKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.91.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
       KZV21817.1  67 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLQ-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-24563IPR009057Homeodomain-like
PROSITE profilePS5129417.746961IPR017930Myb domain
SuperFamilySSF466892.09E-3011108IPR009057Homeodomain-like
SMARTSM007174.7E-131363IPR001005SANT/Myb domain
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001675.21E-101661No hitNo description
PROSITE profilePS5129425.77962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2664116IPR009057Homeodomain-like
SMARTSM007174.7E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001674.74E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTSE EDEKLVDYIS KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEEKLVIQ LHAILGNRWA AIASQLQGRT DNEIKNLWNT HLKKRLLQMG  120
IDPQTHEHAS IVNVSSSTRL PSSPSMHHMA QWESARLEAE ARLSKESMLL RPTTVQKSDT  180
DYFLRLWNSE VGETFRVLKN EERTVKMDSQ SPISSSVTKC GSMLGMATEF GLGQVGSLDA  240
GIKKDHDPEP KIIKSYTDDV QPGSDSASSN ELEDSSESAL QLLFDFPGNN DMSFLNHDFF  300
SLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176249.11e-151PREDICTED: myb-related protein 308-like
RefseqXP_019176250.11e-151PREDICTED: myb-related protein 308-like
RefseqXP_019176251.11e-151PREDICTED: myb-related protein 308-like
RefseqXP_019176252.11e-151PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-119MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2Z7AR380.0A0A2Z7AR38_9LAMI; Myb-related protein Zm38-like
STRINGSolyc01g094360.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-117myb domain protein 17