PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21686.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 318aa    MW: 35996.1 Da    PI: 4.4346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21686.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-1892145356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t +q++ Le+ Fe ++++  e++ +LA +lgL+ rq+ +WFqNrRa+ +
  KZV21686.1  92 KKRRLTVDQVQFLEKSFEAENKLEPERKSQLAVELGLQPRQIAIWFQNRRARLR 145
                 56689***********************************************88 PP
2HD-ZIP_I/II119.61.6e-3891181191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ +qv++LE+sFe+e+kLeperK++la eLglqprq+a+WFqnrRAR +tkq+E+dye+L ++y+ lk + ++L ke+e+L++e+
   KZV21686.1  91 EKKRRLTVDQVQFLEKSFEAENKLEPERKSQLAVELGLQPRQIAIWFQNRRARLRTKQVETDYETLNEKYNCLKIDYDNLLKENEKLNQEV 181
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.08687147IPR001356Homeobox domain
SMARTSM003895.7E-1890151IPR001356Homeobox domain
SuperFamilySSF466894.71E-1891158IPR009057Homeodomain-like
PfamPF000461.5E-1592145IPR001356Homeobox domain
CDDcd000862.11E-1692148No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1894154IPR009057Homeodomain-like
PRINTSPR000318.5E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000318.5E-6127143IPR000047Helix-turn-helix motif
PfamPF021831.8E-11147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMMGRGMIGG GGGGGGGNVP NQKQKLKISS LDQPFDSIFA PASLNPFTGS GAMVDFGAFS  60
VNMSGNLFCR SLEQEEICGD EHLDEYFNHP EKKRRLTVDQ VQFLEKSFEA ENKLEPERKS  120
QLAVELGLQP RQIAIWFQNR RARLRTKQVE TDYETLNEKY NCLKIDYDNL LKENEKLNQE  180
VFHLKENLNA KEKEKENSQS CIMKGPCELW IENPISATVS NDEESTVLAM ACLNEDQSEA  240
RSDSSTGTDS LCYNNGRLSL LLETCDSSQV FEPERSDFSD ESLQLSYVLP KMEEGYCHTS  300
PANPWFPIED HGFSFWSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21686.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087214.12e-89homeobox-leucine zipper protein HAT5
TrEMBLA0A2Z7AJI10.0A0A2Z7AJI1_9LAMI; Homeobox protein isoform 1
STRINGEOY217131e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-37homeobox 1