PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV21625.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 307aa    MW: 34824.6 Da    PI: 8.0695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV21625.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.5e-09120142326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + C+ f++ G C++Gd C FaHg
  KZV21625.1 120 SAACPEFRK-GSCRRGDACEFAHG 142
                 678******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.04269106IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-6118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798118144IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7119142IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.071152176IPR000571Zinc finger, CCCH-type
SMARTSM0035670152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMIHGRANMY VPAWASTAAS ADPTTFPMSL TAREGSSLSD EYHDTLSALQ RYLPSNSNDA  60
GFPEMEGFPV DTHSCDQFRM FEFKVRRCTR GRSHDWTECP FAHPGEKARR RDPRKFHYSS  120
AACPEFRKGS CRRGDACEFA HGVFECWLHP ERYRTLPCKD GMNCKRRVCF FAHCPDQLRV  180
LNPLADSYDS ASPPMGSPPL TPMDISVNDM MASMRQLQLS KVKSMPHSWR THLTRPGGNF  240
ILPTTQTGVL ARPGIRYFEA WEDAVPVMET VQSGRDLRAK MMEKLSLENP LQLNPNPDVG  300
WVSDLLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV21625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078221.11e-121zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G24e-94C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2Z7AII30.0A0A2Z7AII3_9LAMI; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGXP_009791791.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-96C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]