PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20561.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 314aa    MW: 34115.5 Da    PI: 6.7102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20561.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17237270134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  KZV20561.1 237 CLHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 270
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-694314IPR016679Transcription factor, GATA, plant
SMARTSM004019.3E-17231281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.227231267IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-14235294No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14235268IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.26E-13236283No hitNo description
PfamPF003204.4E-15237270IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGPDFADEID CGNFFDQMDN LIEFPPENEC AGGGLVGSSD CQDISSMWNN SLPDSDPLFP  60
GSQTESAADL SAELAVPYED IIQLEWLSTF VEDSFAGGGM TIGKENSGIS KVPPPPHKEF  120
QTSSPVSVLE SSSSSSSSSV GKNMPLVGLQ RARSKRPRPA TFSPRLPIHL ISPSTSGEAP  180
RLSVPPRFHA DTENFAESLP KPDGSEHKKR KKIKSFLPVD PMDSTHLNTP AQSVRKCLHC  240
EITKTPQWRA GPMGPKTLCN ACGVRFKSGR LFPEYRPAAS PTYVPALHSN SHKKVVEMRN  300
KVGLGSMRKT SEME
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRPRP
2207211KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20561.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879233.11e-133GATA transcription factor 8-like
TrEMBLA0A2Z7AMX10.0A0A2Z7AMX1_9LAMI; GATA transcription factor
STRINGXP_009760862.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-43GATA transcription factor 9