PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV20263.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 257aa    MW: 28911.6 Da    PI: 8.8303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV20263.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-05101123223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+k+F+++ +L  H +  H
  KZV20263.1 101 SCSVCSKVFPTSRLLSIHVSEsH 123
                 6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.757398IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807598IPR007087Zinc finger, C2H2
SMARTSM003550.31100123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102123IPR007087Zinc finger, C2H2
SMARTSM003551.7138163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKGGEMGMEV EGSGAGFEFP FWKPLRRSFG PDFPFFEAGN LERELLAKQV ALELTDSEKQ  60
QIRNLEDGGN SEVFCPIVGC GAHLKSLEEF EDHYNARHRA SCSVCSKVFP TSRLLSIHVS  120
ESHDSFFQAK VARGFAMYEC LVEGCGAKLM HYKSRQQHLI DKHKFPASFE FKKANPSRRH  180
RQKLLHKKGS DDASSAPNMQ VDEDSMDTLV SAVSRLSTSD SPSSISFGRR HTRGFAFVPR  240
AVERERRPPS RSHAQTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV20263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840555.11e-126PREDICTED: zinc finger protein 511
TrEMBLA0A2Z7AEX40.0A0A2Z7AEX4_9LAMI; Zinc finger protein 511
STRINGMigut.K01467.1.p1e-126(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-93zinc ion binding;nucleic acid binding;zinc ion binding