PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV20156.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

SRS

Protein Properties

Length: 331aa MW: 36339.4 Da PI: 8.3545

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV20156.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.6	9.2e-66	114	274	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel........kskkqsalss.tkl 91 +++CqdCGnqakkdCah RCRtCCksrgf+C+th+kstWvpaakrrerqqqlaa++++++ + a +++kr re+ ++ al++ t KZV20156.1 114 AGMNCQDCGNQAKKDCAHLRCRTCCKSRGFSCQTHLKSTWVPAAKRRERQQQLAALQQDRQLLTvrAGENPKRLRENpaggdgggSCGGGPALARaTDS 212 679**************************************************99888765555777788888888888887744444444330333 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s++ +++ +lP+ev+s+avfrcvrvs++dd+ee++aYqt+v+igGhvfkGiLydqG e KZV20156.1 213 RFLASTSGFDFGHLPPEVNSPAVFRCVRVSAMDDAEEHFAYQTSVNIGGHVFKGILYDQGRE 274 3445667788888*********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.2E-64	115	274	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.0E-26	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-25	225	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MSGFFSLGGK DQGLQQKDSS NTSFFLFKNE EIYTKGYELW QQYHHLHQQR LQHQQQNLLH 60 CFQDVDFSDG PSGSNIRRNS NIVISSDIGD DSSTYSYRSA SGFRVTRPGK GANAGMNCQD 120 CGNQAKKDCA HLRCRTCCKS RGFSCQTHLK STWVPAAKRR ERQQQLAALQ QDRQLLTVRA 180 GENPKRLREN PAGGDGGGSC GGGPALARAT DSRFLASTSG FDFGHLPPEV NSPAVFRCVR 240 VSAMDDAEEH FAYQTSVNIG GHVFKGILYD QGREIRYPCG GGDQGSSAQQ PLDLITAATS 300 HPNVPMLDPS IYPTPMSSFM AGTQFFSPPR P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV20156.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083639.1	1e-143	protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	3e-75	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2Z7AET3	0.0	A0A2Z7AET3_9LAMI; SHI-related sequence 7
STRING	Gorai.002G125600.1	1e-101	(Gossypium raimondii)
STRING	Migut.N03122.1.p	1e-101	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-61	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]