PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18270.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 1045aa    MW: 115718 Da    PI: 6.1656
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18270.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.9e-16138221499
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +lt sd++++g      +f+   ++++++  +l+ +d++ + W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F   ++++++l+++++r+
  KZV18270.1 138 TLTASDTSTHG-----GDFT---MQPPAQ--ELVARDLHDNIWTFRHIFRGQPKRHLLTTGWSLFVGGKRLLAGDSVLFI--RDEKQQLLLGIRRA 221
                 44444444444.....3333...334444..8************************************************..5688889****997 PP
2Auxin_resp1156.8e-38246329183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa++ s+F+v+YnPras+seFv++++k+ +a+  +++s+GmRf+m+fete+s +rr++Gt++g++dldpvrW+nS+Wr+++
  KZV18270.1 246 AAHAAANDSPFTVFYNPRASPSEFVIPLAKYYRAVCsNQISLGMRFRMMFETEESGTRRYMGTITGITDLDPVRWKNSQWRNIQ 329
                 79****************************99998659*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-31125249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-26126235IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-13134211No hitNo description
SMARTSM010196.2E-13135222IPR003340B3 DNA binding domain
PfamPF023623.4E-13136221IPR003340B3 DNA binding domain
PROSITE profilePS508639.827159222IPR003340B3 DNA binding domain
PfamPF065073.7E-33246329IPR010525Auxin response factor
PfamPF023091.3E-69311018IPR033389AUX/IAA domain
PROSITE profilePS5174527.429331017IPR000270PB1 domain
SuperFamilySSF542772.55E-69461009No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    Send to blast
MKSSSSAGAV PQPANATPSP ADGEKKSINE ELWQACAGPL VNLPAAGTHV VYFPQGHSEH  60
VSASMRKDVD SQVPNYPNLP SKLLCLLHNV KLHADPETDE VYVQMTLQPV PSFDKDSLLR  120
SDLSMKANKP QTEFFCKTLT ASDTSTHGGD FTMQPPAQEL VARDLHDNIW TFRHIFRGQP  180
KRHLLTTGWS LFVGGKRLLA GDSVLFIRDE KQQLLLGIRR ANRQPTNLSS SVLSSDSMHI  240
GILAAAAHAA ANDSPFTVFY NPRASPSEFV IPLAKYYRAV CSNQISLGMR FRMMFETEES  300
GTRRYMGTIT GITDLDPVRW KNSQWRNIQV GWDESTVGER RNRVSIWEIE PVTAPFFICP  360
SPPFIRSKRP RQPGMPDDDV SDLDSIFRRG IPWLSDEFGL NKDHPQGLPG LSLVQWMSMQ  420
QNSSLPNSIQ PNSGNPLSNS VLPNFNGCDI SHQVLGAQLS NNIQFSAAQR LTPPAQLDQL  480
QILPPSTLNP LGSIVLPQQQ FTEVTQMPRP NLLGQALPTN QVQPLNVLQQ QQSLLNHQLQ  540
RNLAQNLSQH QGTGNSLQHN LMSSEPPDHV SDNQVQLQLL QKLRQQQQSL LAQQSVVQQA  600
PVPTQLLDQQ KHLLDIPSNF SRPMPATKIL DSPKSHVIAQ QMARSNSQMN LKFAQSPQQT  660
KLQQSRVVQE LPVHQGNALN LMNNQISTDC SGCIMPGATG GGGHSVVTDD VPSCSTSPSM  720
NNFPNTAQYA INSNDLETMP SDGNLTKDFQ KKYDVKATLN VPKSPDLGFF TSQSYLNGTQ  780
LDYLDSSSSA TSVISQNDAQ VSQNNTVSFN PQSILLRDAI QDVEVHGDMR NSVVSFDASI  840
ENQFGMPMMQ ESFITKNMEG SSKDFTSNVT SEGGILSSFE NSKVAQPELS SSMVSQSFGI  900
PDMTFNSIDS TMNDGNNFVS KGAWAQPQMP RMRTFTKVYK RGAVGRSIDI ARYSGYDELK  960
QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVHCI KILSPQEVQQ  1020
MSFDGDFENG VLRNQTCSTS DNGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1532435047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553508.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2Z7A9B00.0A0A2Z7A9B0_9LAMI; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19