PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18205.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 784aa    MW: 87174.5 Da    PI: 6.067
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18205.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.5e-2053108156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  KZV18205.1  53 KKRYHRHTARQIQEMEGLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 108
                 688899***********************************************998 PP
2START145.74.2e-462514771206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                 ela ++++elvk+   +ep+W +      e +n +e+++ f+ s++       +++ea r+++vv+m++ +lv  +ld + +W e ++    +a+tl+v
  KZV18205.1 251 ELAISCMDELVKMCHTGEPLWIRATetakEVLNLEEYTRMFSWSGNlkqhsneFRIEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsiisRAKTLQV 348
                 57889******************998888888888888888887779*999*****************************.****************** PP

                 ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
       START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                 + sg      g l+lm+aelq+lspl p R+  f+Ry++   ++g+w+ivd  +d  ++++pp s ++ +  ++pSg++i++++ng+s+vtwveh++++
  KZV18205.1 349 VHSGvsghasGSLHLMYAELQVLSPLIPtRETHFLRYCQHnAEEGTWTIVDFLLDgfHNSYPP-SFPYYK--KRPSGCIIQDMPNGYSRVTWVEHAEVE 444
                 ****************************************9*************977888888.788888..*************************** PP

                 SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                 +  +h+++++ v sg+a+ga +w+a lqrqce+
  KZV18205.1 445 DGPIHQVFHHQVASGTAFGAHRWLAVLQRQCER 477
                 *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2034108IPR009057Homeodomain-like
SuperFamilySSF466895.85E-1945111IPR009057Homeodomain-like
PROSITE profilePS5007116.82750110IPR001356Homeobox domain
SMARTSM003894.2E-1851114IPR001356Homeobox domain
CDDcd000861.13E-1753111No hitNo description
PfamPF000461.3E-1753108IPR001356Homeobox domain
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PROSITE profilePS5084841.462242480IPR002913START domain
SuperFamilySSF559614.62E-30243479No hitNo description
CDDcd088753.19E-116246476No hitNo description
SMARTSM002345.8E-34251477IPR002913START domain
PfamPF018523.1E-38252477IPR002913START domain
SuperFamilySSF559611.02E-16503741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSNINPFNIF SPIIPKEENG MAKSKEESGS GSERIEGFSG NEQEAEQQQP AKKKRYHRHT  60
ARQIQEMEGL FKECPHPDDK QRLKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRQDNVVLR  120
AENESLKNEN YRLQAALRNI VCPSCGGPAM LGEMGYDEQQ LRIENARLKE EFERVCCIVS  180
QCTGQSLQSL GPTPLLPSSL DLEISAYPRK FDQEHIPNCP SDMIPLPFVT ENSHFSANSL  240
IMEEEKSLAV ELAISCMDEL VKMCHTGEPL WIRATETAKE VLNLEEYTRM FSWSGNLKQH  300
SNEFRIEATR DTAVVIMNSI TLVDAFLDAN KWMELFPSII SRAKTLQVVH SGVSGHASGS  360
LHLMYAELQV LSPLIPTRET HFLRYCQHNA EEGTWTIVDF LLDGFHNSYP PSFPYYKKRP  420
SGCIIQDMPN GYSRVTWVEH AEVEDGPIHQ VFHHQVASGT AFGAHRWLAV LQRQCERLAS  480
LMARNISDLG AIPSSNARKN LMNLAQRMIR TFCLNISTSC GQSWTALSDS ADDTVRITTR  540
KVVDPGQPNG LILSAVSTTW LPYQHNQVFD FLRDERRRAQ LEVLSNGNSL HEVAHIANGS  600
HPGNCISLLR INVASNSSQS VELVLQESCS DDSGSMVVYT TIDVEAVQLV MSGDQDPSCI  660
PLLPLGFIMT PMDHVSVEDP ITNKSNTKQA SDTDQLSINP GCLLTVGLQV LASTIPSAKL  720
NLSSVTAINH HLCNTVQQIN NALSNGNGNG NSTGNLAENG NVLAPNMDAP PAISIKQKSP  780
ESTS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070329.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2Z7AA150.0A0A2Z7AA15_9LAMI; Uncharacterized protein
STRINGMigut.E00753.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]