PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV17764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 27648.7 Da PI: 7.4473 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.1e-16 | 43 | 130 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k ++ps+v +l lpkkf++ + + ++ t+ l de+g++++ + ++++ l++GW++F +++L gD+++F+l++ + +v++ KZV17764.1 43 FVKCMLPSNVAHGFWLHLPKKFCTLYFPN--RDSTICLVDEWGNEYKTSYLLERHG----LSAGWRGFSISHRLLNGDILIFHLIEPCKL--KVHI 130 89*********************999744..5669***************777776....***********************9986555..5544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.28E-22 | 37 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-19 | 39 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.97E-23 | 41 | 130 | No hit | No description |
Pfam | PF02362 | 1.9E-13 | 43 | 130 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-19 | 43 | 134 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 43 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSNSIARKRT RYSDIYDDVE AKFSVMERAE RVLTRLENGL PYFVKCMLPS NVAHGFWLHL 60 PKKFCTLYFP NRDSTICLVD EWGNEYKTSY LLERHGLSAG WRGFSISHRL LNGDILIFHL 120 IEPCKLKVHI VTVNRSEVMS AALCLMNLDA SRRGIDDSEN LVKKNSKKRK KTEYVEPFLL 180 DMSGPNESCE VKNEPCSDFG SNSQDFSSTI IQGSNQLKAN DLCYPETLML HDHPRETITC 240 I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 170 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV17764.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088276.1 | 1e-119 | B3 domain-containing protein At3g19184 isoform X1 | ||||
TrEMBL | A0A2G9HCQ1 | 1e-101 | A0A2G9HCQ1_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2Z7BYW9 | 1e-102 | A0A2Z7BYW9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009612758.1 | 2e-91 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-33 | B3 family protein |