PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV15946.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 310aa MW: 35649.1 Da PI: 6.3527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV15946.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.3e-55	13	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv + ++++ +i +vd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdke+++ ++l KZV15946.1 13 LPPGFRFHPTDEELITHYLSAKVLDFSFSA-IAIGQVDLNKVEPWDLPWKAKMGEKEWYFFCLKDRKYPTGLRTNRATDSGYWKATGKDKEIFR-AETL 109 79***********************999.88***********888999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grap+gek+dWvmheyrle KZV15946.1 110 VGMKKTLVFYRGRAPRGEKSDWVMHEYRLE 139 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-63	9	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.045	13	160	IPR003441	NAC domain
Pfam	PF02365	1.3E-28	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEDMFGSDEQ IELPPGFRFH PTDEELITHY LSAKVLDFSF SAIAIGQVDL NKVEPWDLPW 60 KAKMGEKEWY FFCLKDRKYP TGLRTNRATD SGYWKATGKD KEIFRAETLV GMKKTLVFYR 120 GRAPRGEKSD WVMHEYRLEG KNSMCKSAKN EWVICRVFNK SSSGKKIHVS GIDYGVNSQS 180 ALPSLMELSY DENQSRRFAE AQVSTNLPCF SSTQMEDRRN FSPLASPPFS QDRIFQFHHN 240 MHYPDSAMIQ DQSILKILLE NNGPSMKENA EPGFLHESGN PEVGFKPFGE QEFADASSFS 300 SHHDCLWNNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-56	10	166	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-56	10	166	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-56	10	166	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-56	10	166	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-56	10	166	17	174	NAC domain-containing protein 19
3swm_B	4e-56	10	166	17	174	NAC domain-containing protein 19
3swm_C	4e-56	10	166	17	174	NAC domain-containing protein 19
3swm_D	4e-56	10	166	17	174	NAC domain-containing protein 19
3swp_A	4e-56	10	166	17	174	NAC domain-containing protein 19
3swp_B	4e-56	10	166	17	174	NAC domain-containing protein 19
3swp_C	4e-56	10	166	17	174	NAC domain-containing protein 19
3swp_D	4e-56	10	166	17	174	NAC domain-containing protein 19
4dul_A	4e-56	10	166	14	171	NAC domain-containing protein 19
4dul_B	4e-56	10	166	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV15946.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085744.1	1e-128	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-101	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2Z7A380	0.0	A0A2Z7A380_9LAMI; NAC domain-containing protein 100
STRING	Gorai.008G194400.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-103	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]