PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15480.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YC
Protein Properties Length: 264aa    MW: 29297.4 Da    PI: 4.6313
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15480.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.89.7e-131693098
       NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                ++adedv +i+  +P l+ska elf+ +l  r++  + +   +t++   ++++v++ ++fdfl d+v +
  KZV15480.1  1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTVNSLHLKQCVQSFNVFDFLKDTVSK 69
                899**************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.5E-18168IPR009072Histone-fold
SuperFamilySSF471133.56E-19171IPR009072Histone-fold
PfamPF008081.4E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLKR GAKTVNSLHL KQCVQSFNVF  60
DFLKDTVSKV PDIGGSDAAT EDRSAAKRRK VLEDEEHGND DESKRIHMPE TGNTSSSGRG  120
RGRGRGRGRG RGSRMLERES IGQHEKIEDD PNMFHQNGEN QEEKLRKTDN VAGPAESRPI  180
VEKSSEKLVR NFDLNIDLNV AGDSTPKLAG APSDTSTKPT PFLKNEEIPG WSLDDMKQMA  240
IDPIQLTNLN GTIDEEDEDY DEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120130RGRGRGRGRGR
2122131RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080490.11e-112dr1-associated corepressor
TrEMBLA0A2Z7A9480.0A0A2Z7A948_9LAMI; Dr1-associated corepressor-like
STRINGXP_010031686.12e-86(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.19e-50nuclear factor Y, subunit C11