PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15479.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 298aa    MW: 33310.2 Da    PI: 9.8346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15479.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022228250123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k Fs+   L  H+r+H
  KZV15479.1 228 HTCKICFKKFSSGQALGGHQRRH 250
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-7154178No hitNo description
PfamPF139129.0E-6156179IPR007087Zinc finger, C2H2
SMARTSM003550.039156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-7223250No hitNo description
PfamPF139124.9E-8227251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369228256IPR007087Zinc finger, C2H2
SMARTSM003550.27228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNIEAGRTGL KLRFKLPRKT MAGENLDSTA DLSRSLIPWQ GKARRTMRRE VSPPPRVPSS  60
EHQNRSPQAV IISGKCKLEE TDQNGSVEKS QKTDSASMDY PIISSGANHD GESGVSEIQS  120
NSIDEISVGT KSNSSNKRCT DESEDQVTSV VLPKIYACSF CSKTFSSHLA LGGHKSSHNK  180
FQMIIYNAID LRRRKRPSMI TNACHQQPRE DRHNASNPES VGDDDRTHTC KICFKKFSSG  240
QALGGHQRRH WTGNMPDRRP EIRYTLDFHS GSEKSISHIR GHTFGTTLDH QCRQHGPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196LRRRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15479.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7A2390.0A0A2Z7A239_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-15C2H2 family protein