PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15478.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 269aa    MW: 30075.6 Da    PI: 8.8103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15478.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019207229123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C k Fs+   L  H+r+H
  KZV15478.1 207 HTCKICFKKFSSGQALGGHQRRH 229
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-7134158No hitNo description
PROSITE profilePS501579.847136163IPR007087Zinc finger, C2H2
SMARTSM003550.039136158IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-6136159IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-7202229No hitNo description
Gene3DG3DSA:3.30.160.600.001205232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-8206230IPR007087Zinc finger, C2H2
SMARTSM003550.27207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369207235IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAGENLDSTA DLIRALKPWQ GKARRTMRRE VSLPPRVPSS EHQNRSPQAV VISGKRKLEE  60
TDRNGSVEKS KKTDSASVDY PIISSGANHD GESGVSEIQS NSIDEISLGT KSNSSNKRCT  120
DESEDQVTSV VLPKIYACSF CSKTFSSHLA LGGHKSSHNK FQMIIYNAID LRRRKRPSMI  180
TNACHQQPRE DRHIASNPES VGNDRTHTCK ICFKKFSSGQ ALGGHQRRHW TGNMPDQKKT  240
ISAPKILDFD LNELPDEQDE DPSSYFLFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176LRRRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6ZY530.0A0A2Z6ZY53_9LAMI; Uncharacterized protein
TrEMBLA0A2Z7A1I70.0A0A2Z7A1I7_9LAMI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-15C2H2 family protein