PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV15004.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 189aa    MW: 20835.3 Da    PI: 10.8726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV15004.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.5e-194578134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                Cs C+tt TplWR+gp+g+k+LCnaCG+++rk +
  KZV15004.1 45 CSDCNTTRTPLWRSGPNGPKSLCNACGIKQRKAR 78
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.6E-193991IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-124178No hitNo description
Gene3DG3DSA:3.30.50.102.5E-154378IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.5854375IPR000679Zinc finger, GATA-type
CDDcd002021.56E-124476No hitNo description
PfamPF003207.5E-174578IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404570IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRLMQKIKKN HDGLDLNLTS FCTTKRSSYC GTDSRSHDNI PIRVCSDCNT TRTPLWRSGP  60
NGPKSLCNAC GIKQRKARRA AMAAASSANG AVFPADKPRA LFKIKMQHEE KATGKNPKAS  120
RLMEGSKMAR NVANIAAGSK SKIGQKKLCR FEDLLMKLSK NLTIRRVFPE DEMEAAILLM  180
ALSSGLLHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV15004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.23e-48LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A2Z7A0D61e-137A0A2Z7A0D6_9LAMI; GATA transcription factor 22-like
STRINGMigut.J00606.1.p2e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-26cytokinin-responsive gata factor 1