PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV14701.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 322aa    MW: 36002.5 Da    PI: 6.9726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV14701.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd++l  +++q G+++W++I+++ g+ R++k+c++rw +yl
       KZV14701.1 14 RGQWTPEEDQKLSSYIAQNGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding44.82.9e-1468110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++ E++ +v ++  lG++ W+ Ia+ ++ gRt++++k++w++
       KZV14701.1  68 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLQ-GRTDNDVKNHWNT 110
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129427.044965IPR017930Myb domain
SuperFamilySSF466891.5E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-171461IPR001005SANT/Myb domain
CDDcd001678.49E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2365116IPR009057Homeodomain-like
SMARTSM007172.4E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.61766116IPR017930Myb domain
PfamPF002498.1E-1368110IPR001005SANT/Myb domain
CDDcd001673.77E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRIPCCEKE NVKRGQWTPE EDQKLSSYIA QNGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLQGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLITEIATLP PPQAPNLAEA ALGCFKDEML HLLTKRRIDL QMQQCGTAPP  180
NHNICIKPED NKDDTIEKIK FGLSKAIKEP DLFPINMPWD PVGATSVNLD RSFHTYTGSD  240
SGFHYELASL GNNGDVSPWS QSLCTGSTCA GGDQHGHLHE NLENEQGENS GTRKETRIGS  300
SIFNSDCSLW DLSSDDLINP II
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV14701.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554535.11e-177transcription factor MYB80
SwissprotQ7XQN11e-109MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2Z7A0660.0A0A2Z7A066_9LAMI; Uncharacterized protein
STRINGVIT_19s0015g01280.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-109myb domain protein 103