PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca9475.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family E2F/DP
Protein Properties Length: 299aa    MW: 32959 Da    PI: 7.6303
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca9475.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP695.7e-22721391571
    E2F_TDP  15 klleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +l+ek+++ g++t+neva+eLv+e           d kn+rRR+YD+l VL+a+++i+k +k+ei+w+g
  Dca9475.1  72 QLCEKVKSkGRTTYNEVADELVAEyasialgtegdDKKNIRRRVYDALSVLTAMHIISK-DKKEIQWRG 139
                59***9999**************************9***********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.0E-1852139IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3168144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023197.7E-1969139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-1570140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.7E-45146281IPR014889Transcription factor DP, C-terminal
PfamPF087812.8E-34148274IPR014889Transcription factor DP, C-terminal
CDDcd144581.75E-35148245IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-34148260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVTGNLQEDG EKKSKGINQS WGTTVSGQSV STSGRVGSPS SQSEAGMATP VRDITALRLS  60
NLANQGDDFA SQLCEKVKSK GRTTYNEVAD ELVAEYASIA LGTEGDDKKN IRRRVYDALS  120
VLTAMHIISK DKKEIQWRGF PRTSSIHIEE LKTERVALEK RIEKKTAYLQ ELEEQFTGYA  180
NLIQRNQQLY GNGTAPSGHV TLPFILAQTR ADATVEMEIS EDMKLVHIDF NSTPFKLRDD  240
NFVLKHTNFC QKPQLDSGVS NPPASAGDNT TMPKPNTYHP RTLLSSSSKP CHALATQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-24691451594PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733541.11e-125transcription factor-like protein DPB
RefseqXP_021733542.11e-125transcription factor-like protein DPB
SwissprotQ9FNY21e-101DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7YP911e-113A0A1U7YP91_NELNU; transcription factor-like protein DPB
STRINGXP_010678871.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-92Transcription factor DP