PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca899.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 165aa    MW: 19369.8 Da    PI: 10.4991
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca899.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-314096158
  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
               +ep+YVNaKQy++Il+RR +Rakle+ +kl  k+rkpylheSRh+hA++R+Rg+gGrF
   Dca899.1 40 EEPVYVNAKQYRGILRRRLHRAKLEALNKL-VKNRKPYLHESRHQHAVKRARGTGGRF 96
               69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-343899IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.9453999IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-274196IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-224264IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604464IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-227396IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSFYYPVIGY LPMRHFDRLN SQVTGTTPAR VPLPLEVPTE EPVYVNAKQY RGILRRRLHR  60
AKLEALNKLV KNRKPYLHES RHQHAVKRAR GTGGRFLNKK AVQSSNSFHE SEVRQQEHHR  120
QRISSASVFD ATSMSTSDEI YRPTEFRFYE YTSRVEETGD QNYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-1939104166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720491.12e-52nuclear transcription factor Y subunit A-3-like
RefseqXP_021720492.12e-52nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH23e-34NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2I7ZAT76e-48A0A2I7ZAT7_SESPO; Nuclear factor Y subunit A8
STRINGXP_010685336.11e-48(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.16e-28nuclear factor Y, subunit A5