PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca8901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 28607.8 Da PI: 7.5847 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48 | 2.3e-15 | 25 | 116 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffk+ + ++vl + +l++p +f++++g++ s+ tl +sg ev++ ++ ++ ++++GW +F ++n++k g f+ F++ ++ +f +v++f+ Dca8901.1 25 FFKIILFPSVLDHPMLRIPDTFTKKFGEQ--LSTVATLIVPSGIACEVEV--VRRENKLYFAQGWPQFMESNQIKHGYFLEFEYLENGRF--NVRIFD 116 899999********************966..999****************..999999*************************9887777..999997 PP | |||||||
2 | B3 | 32.2 | 1.9e-10 | 153 | 238 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + l +pk f+e+h+ +++ +k+++l+ + r+W+v + + ++++ lt W +F k+n+ + + + +Fk ++++ +lv++v+r+ Dca8901.1 153 NYLHIPKWFVEQHMRDHTLNKEVKLQVmGDAREWSVPC--ARVQQGFRLTgVEWTKFTKDNNWRCRQVYTFKIAKKDSHSLVFQVLRS 238 6799*********99999********97777*******..8888888888246*******************888899999***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.75E-21 | 19 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-19 | 20 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-15 | 23 | 116 | No hit | No description |
SMART | SM01019 | 1.1E-12 | 25 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 25 | 118 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-13 | 25 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-13 | 137 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.404 | 140 | 239 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-9 | 141 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0054 | 143 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-7 | 152 | 238 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSPNKVVAKQ SGMTVSSSSS YPFRFFKIIL FPSVLDHPML RIPDTFTKKF GEQLSTVATL 60 IVPSGIACEV EVVRRENKLY FAQGWPQFME SNQIKHGYFL EFEYLENGRF NVRIFDLSCC 120 EIEYPMHVEV EVEVEVDEEA ASFSIVVHPC HTNYLHIPKW FVEQHMRDHT LNKEVKLQVM 180 GDAREWSVPC ARVQQGFRLT GVEWTKFTKD NNWRCRQVYT FKIAKKDSHS LVFQVLRSSR 240 SHESV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 2e-24 | B3 family protein |