PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca8086.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 217aa MW: 24289.5 Da PI: 10.683

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca8086.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.7	4.8e-13	1	37	16	52
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +p AAkeL+v++++L r+CR + IkRWP+ iksl Dca8086.1 1 MPASRAAKELNVSVSALRRRCRVLKIKRWPYKEIKSL 37 57789******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	3.4E-12	1	37	IPR003035	RWP-RK domain
PROSITE profile	PS51519	13.913	1	58	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MPASRAAKEL NVSVSALRRR CRVLKIKRWP YKEIKSLELL ISNVKEMGMM EVAQKLEEDK 60 EKLYYLPGLE LSEETKRLRQ FCFKLTKTIN DNNNLDGHRF TTVTAGAFTP FNSTTTIQQP 120 PPVTPAHLPP LPPSSSLCFS VHRKPAPRRP CLPPPLPSFV FPTTMTRTVM ATSSLTTVAP 180 SLFPFSCSLA SPLFFLVYWS IAGAATPTTV PRRGLIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-22	RWP-RK domain-containing protein