PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca7775.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 372aa MW: 42026.8 Da PI: 4.9808

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca7775.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.6e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C G +CkF+H+ Dca7775.1 90 KSILCEFFKA-GQCTKGFKCKFSHD 113 66797777.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.394	88	115	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	88	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	88	114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	90	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.498	159	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9	159	196	IPR000571	Zinc finger, CCCH-type
Pfam	PF16543	4.7E-17	216	297	IPR032378	ZC3H15/TMA46 family, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MPPKQQPSKA DLAKKQKLVE DKTFGLKNKN KSKNVQKYVQ NLKQSVQPKA DPKKDAKKKK 60 EEEKAREKEL NDLFKIAVTQ PKVPIGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DDEGTMEDWD QEMLEKAIAE KSKEYQQNKP TEIVCKHFLD AVEKKQYGWF 180 WVCPNGGKNC HYRHALPTGY ILKSQMKALL EEESEKMAIE DEIEDQRSKV KGSTPMTPEL 240 FAQWKKKKLD EKAASVASQT AERAKNDRLS GRELFMSDAS LFVDHAEAWD NYERDESQDN 300 EAQANEKPGG ADGSSSSSHV NPDAPSSSGT ANGDDDDIPD DIDDDLDDDE LEELEASLSR 360 TSIQINEPNT SA

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MPPKQQPSKA DLAKKQKLVE DKTFGLKNKN KSKNVQKYVQ NLKQSVQPKA DPKKDAKKKK  60
EEEKAREKEL NDLFKIAVTQ PKVPIGVDPK SILCEFFKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DDEGTMEDWD QEMLEKAIAE KSKEYQQNKP TEIVCKHFLD AVEKKQYGWF  180
WVCPNGGKNC HYRHALPTGY ILKSQMKALL EEESEKMAIE DEIEDQRSKV KGSTPMTPEL  240
FAQWKKKKLD EKAASVASQT AERAKNDRLS GRELFMSDAS LFVDHAEAWD NYERDESQDN  300
EAQANEKPGG ADGSSSSSHV NPDAPSSSGT ANGDDDDIPD DIDDDLDDDE LEELEASLSR  360
TSIQINEPNT SA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696358.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 11
Swissprot	Q0JHZ2	1e-176	C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBL	A0A0J8E1P0	0.0	A0A0J8E1P0_BETVU; Uncharacterized protein
STRING	XP_010696358.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-155	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]