PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca61864.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB

Protein Properties

Length: 277aa MW: 31149.6 Da PI: 6.1759

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca61864.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEdell+++v+++G g+W++ ++ g+ R++k+c++rw +yl Dca61864.1 14 KGPWSSEEDELLLNYVTLHGHGNWRSLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.4	4.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l Dca61864.1 67 RGPFTVDEEKLVMQLHAILGNR-WAAIAAQLP-GRTDNEIKNLWNTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.002	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.03E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.769	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.53E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGRTPCCEKE NMKKGPWSSE EDELLLNYVT LHGHGNWRSL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGPF TVDEEKLVMQ LHAILGNRWA AIAAQLPGRT DNEIKNLWNT HLKKRLVSMG 120 IDPVTHEPTS ASRGPAVNPP ASPSTRHMAQ WENARLEAEA RLSRESLIYN PHSSSDNVYD 180 SDFFLRLWNS DASSSAKCAS SSGVTVDNCQ VSEFSKIRDQ HTDDKDSKSH SCTGEVDDSS 240 ESSALQLLLD FPYSNDMSFL EDHIDDYSIY PSMLSNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-27	11	116	4	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269\|PubMed:19232308, ECO:0000269\|PubMed:21750030}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717496.1	1e-134	transcription factor MYB41-like
Refseq	XP_021717538.1	1e-134	transcription factor MYB41-like
Swissprot	Q9M2D9	1e-112	MYB17_ARATH; Transcription factor MYB17
TrEMBL	A5C9D4	1e-128	A5C9D4_VITVI; Uncharacterized protein
STRING	XP_010672001.1	1e-133	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-112	myb domain protein 17