PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca61853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29307.2 Da PI: 9.6005 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.9 | 1.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ Dca61853.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 110.5 | 1.8e-36 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ +s + + + s++ e+akLk+++e Lq+++Rh++Ge+L++LslkeLq+Le+qL+++lk+iRskKn+l++e+i+elqkk k+lqe+n+aL+kk++e Dca61853.1 76 AEKQITSPDPNSHGSWTLEHAKLKARLEILQKNHRHYMGEELDTLSLKELQNLEHQLDTALKHIRSKKNQLMYESISELQKKDKALQEHNNALSKKVKE 174 66777777788899**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.46E-34 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.77E-42 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.3E-29 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.878 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATD 60 SCMEKILERY ERYSYAEKQI TSPDPNSHGS WTLEHAKLKA RLEILQKNHR HYMGEELDTL 120 SLKELQNLEH QLDTALKHIR SKKNQLMYES ISELQKKDKA LQEHNNALSK KVKEKEKEKE 180 KAIAEQAQWE QQTHGLNSSA FFSPQAMPPL NMRGSYETGN SVIEDEAQQS RNRNNSSSSN 240 ALVPSWMLNH LADQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021757205.1 | 1e-135 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-123 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | Q41356 | 1e-139 | Q41356_SILLA; SLM5 protein | ||||
STRING | XP_010678364.1 | 1e-132 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 4e-96 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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