PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61266.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 423aa    MW: 46627.6 Da    PI: 4.4726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61266.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.43.4e-142673062159
                 -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  r+YY+C++  gC++kk+vers ed ++ ++tY+g+H+h+
  Dca61266.1 267 RRNYYKCSTIkGCTAKKHVERSPEDSETYIVTYTGQHHHP 306
                 59*****9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.8E-7258307IPR003657WRKY domain
SuperFamilySSF1182901.31E-12266308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-15267308IPR003657WRKY domain
PfamPF031061.2E-10267306IPR003657WRKY domain
PROSITE profilePS5081118.36268308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MVDSWSLIAV VNECANRVKL RGGDDGGGGG GDGGGLNTTT TTTTQNTTVV DTDKCDDPFS  60
FENYPLFSAQ FDVENSDFLQ SPLFSADQID STTHINSGEN PSLFSNSLQN NSSFFDQIDS  120
ITHINSVENP SLFSNPLFSG QIDSTTYTNS MMNPSFSNQV DKTNNENSTK GSNSRNPVGC  180
DDHFMNLYKH FTVPPRVRRS PAAGGPLQDF REVKDELDDF VQTGVDDDQQ LQLPANEPLI  240
PTKCTSSNDD NDAASFDVDD DHFPHRRRNY YKCSTIKGCT AKKHVERSPE DSETYIVTYT  300
GQHHHPYPTY SNNGGYRLKG PRKNNPNQAA IGTRTPTSTM ATYLNNVGPS RSSAGTCDEE  360
GGNDNILNLN LTEIFNSADG CANECGYEYE KCDKIVNTSV LEKGANRNYG IWDKEMNKTQ  420
LLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-15WRKY family protein