PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61065.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WOX
Protein Properties Length: 311aa    MW: 34861.7 Da    PI: 6.9321
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61065.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-183091257
                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+t+t+eq++ L+el++    r p+a++++ + ++l    +++ ++V++WFqN++a+e++
  Dca61065.1 30 STRWTPTTEQIKMLKELYYIngVRSPTADQIQAICSRLrrygKIEGKNVFYWFQNHKARERQ 91
                58****************95459*************************************97 PP
2Wus_type_Homeobox110.41e-352993265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQik+L+ely+ +G+r+P++++iq i ++L++yGkie+kNVfyWFQN+kaRerqk+
         Dca61065.1 29 SSTRWTPTTEQIKMLKELYYiNGVRSPTADQIQAICSRLRRYGKIEGKNVFYWFQNHKARERQKK 93
                       789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-71691IPR009057Homeodomain-like
SuperFamilySSF466893.94E-112198IPR009057Homeodomain-like
PROSITE profilePS500719.8312692IPR001356Homeobox domain
SMARTSM003898.4E-42896IPR001356Homeobox domain
CDDcd000861.97E-53193No hitNo description
PfamPF000462.3E-153191IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MENPVEQNGE QNVEKIGTSS SSSYVCRQSS TRWTPTTEQI KMLKELYYIN GVRSPTADQI  60
QAICSRLRRY GKIEGKNVFY WFQNHKARER QKKRLTPTSI NINNNINCWK QDDFTKYPTS  120
STSINNNNFT TTTTNNNNNN NNINNINNNN NNPAAGGGGQ LMGSFGYGAM TMENKFRDCS  180
ISGGFNTTPQ WTSPAAAAAT GGTTNYNTTS YASFPNFHDK LSATFDEDHE QDHYVVTTEI  240
ETLPLFPMHD KDNDHNNNNN NNNNQFSRDH QFPSSAGFYT GGYCWSNGGG NGASLELTLN  300
SYGYGCYSHN Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680087.12e-96PREDICTED: protein WUSCHEL
TrEMBLK7ZLU21e-110K7ZLU2_SILDI; Protein WUSCHEL-like
STRINGXP_010680087.17e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-34WOX family protein