PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca60722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 243aa MW: 27578 Da PI: 8.0678 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.6e-28 | 118 | 171 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl W+ eLH++Fv+av++L G+ekA Pk+il++m+v+gLt+e+v+SHLQkYRl Dca60722.1 118 KPRLFWSVELHQKFVDAVNSL-GIEKAFPKKILDMMNVEGLTREKVASHLQKYRL 171 79*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 14.789 | 1 | 42 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 1.85E-8 | 3 | 48 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-11 | 3 | 49 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-11 | 99 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 115 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.109 | 115 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-19 | 115 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-23 | 118 | 171 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-7 | 123 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MTVLSSYSDT KRVMQGIRNG ACDYLVKPVR IQELQNIWQH VVRRNKSITL KRPPPSSIEL 60 QVNNEEFNQN NYYVHDVPCE KRKCKILEEN SSRGDDMNDD DEQEDSGRDN EESTQPKKPR 120 LFWSVELHQK FVDAVNSLGI EKAFPKKILD MMNVEGLTRE KVASHLQKYR LYLRKVNDGT 180 DEASSKISAY ENGNIGPLGG GYGVFQSLAG TTTRYPGINQ SLLHPAMFGR LNTVAGANLA 240 YQH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 114 | 177 | 1 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010687814.1 | 3e-78 | PREDICTED: two-component response regulator ARR12 | ||||
TrEMBL | A0A0K9QUN4 | 9e-72 | A0A0K9QUN4_SPIOL; Two-component response regulator | ||||
STRING | XP_010687814.1 | 1e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58080.1 | 2e-46 | response regulator 18 |