PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60691.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GRF

Protein Properties

Length: 288aa MW: 32201.7 Da PI: 9.4045

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60691.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	67.9	1.3e-21	86	127	1	42
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r++s+ +k Dca60691.1 86 DMEPGRCRRTDGKKWRCSKEAHPNSKYCERHMQRSKSKAKKA 127 78************************************9986 PP
2	QLQ	43.8	7.8e-16	16	50	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT +Q+++L++Q+l ++yL++++PvPp L+ ++ Dca60691.1 16 IFTVNQWNELENQVLTFRYLMSGLPVPPSLMSSVF 50 59*****************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.4E-8	15	51	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.087	16	51	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.1E-11	16	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	21.849	86	130	IPR014977	WRC domain
Pfam	PF08879	6.7E-18	88	126	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MMKGKSRAET TTTTTIFTVN QWNELENQVL TFRYLMSGLP VPPSLMSSVF SSSSSSDMFP 60 QHQHPPPPPF GSSYFHVGYG HGRKVDMEPG RCRRTDGKKW RCSKEAHPNS KYCERHMQRS 120 KSKAKKAITN RNPEITTATS SAPLSNAYSP YPAVSYCPVT QSGDPNNKFQ PGNSTFYPFL 180 ATQSSSSNVS VSVRNGGTGP NWLGLDDVFL NQPRKEETRY TNSHTRGIVG ESFSGFEASS 240 KEEHKNKTVG EVKEEEEHES QKLYHHFLGD WPSKLNNSRA LGLYSTSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06200.1	6e-23	growth-regulating factor 6